NEW YORK — Mets closer Francisco Rodriguez was charged with third-degree assault late Wednesday night after scuffling with his father-in-law at Citi Field, police said.

Rodriguez was arrested and being held at the ballpark early Thursday, police said. His father-in-law was in a hospital with a scrape on his face and a bump on his head.

“There was an incident at the ballpark between Francisco Rodriguez and his family. He was questioned by police and all other questions pertaining to this matter can be addressed to police,” Mets spokesman Jay Horwitz said.

Several security guards, along some women and children, were seen around the Mets’ family lounge near the clubhouse after New York’s 6-2 loss to Colorado. Rodriguez’s father-in-law had swelling above his right eyebrow.

Rodriguez has had previous confrontations with a team official, a coach and an opponent in his 1 1/2 seasons with the Mets, though none of them reached this level.

The excitable, 28-year-old pitcher signed a three-year, $37 million contract with the Mets after posting a record 62 saves with the Angels in 2008. He is 4-2 with 25 saves and a 2.24 ERA this season.

In May, Rodriguez and bullpen coach Randy Niemann got into a heated exchange while the pitcher was preparing to enter a game. Mets manager Jerry Manuel later said the matter was resolved, without divulging what caused the dispute.

In July 2009, Rodriguez and former Mets official Tony Bernazard argued aboard the team bus. Bernazard was later fired by the Mets amid several allegations.

That June, Rodriguez and New York Yankees reliever Brian Bruney needed to be separated before a game. They had jawed at each other in the media a day earlier.